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Mechanistic Evolutionary Biology using the Awesome Power of Non-model Yeasts

Centromere Structure | Cell Cycle Division | Chromatin | Evolution | Genetics | Biochemistry

Current Research

My current research explores how centromeres evolve and how centromeres nucleate kinetochore assembly. I use multidisciplinary approaches such as phylogenetics, genomics, biochemistry, and structural methods. I use yeasts as a model system and look to make Saccharomycotina a model subphylum for cell biology.

Centromere Evolutionary Genomics

Unlike most eukaryotes, brewer’s yeast have genetic “point” centromeres. Despite being the first centromeres discovered over forty years ago, we still have little understanding of how they evolved. Because point centromeres share no clear homology with other centromere types, it has been difficult to reconstruct their origins.

In our work on a sister group to brewer’s yeast, we identified a new class of centromere—“proto-points”—that appears to represent an evolutionary transitional state. These findings suggest that point centromeres are direct descendants of LTR retrotransposons.

I’m also interested in how historical contingency shapes modern centromere function. From this perspective, I aim to understand how the ancient allopolyploid whole-genome duplication event influenced the present-day function of S. cerevisiae centromeres. I first presented this observation and hypothesis during my PhD work.

Representative publications (@ = Corresponding Author)

  • Haase MAB@, Lazar-Stefanita L, Baudry L, Wudzinska A, Zhou X, Rokas A, Hittinger CT, Pfander B, Musacchio A, Boeke JD@. Ancient co-option of LTR retrotransposons as yeast centromeres . Nature, 2026
  • Haase MAB, Ólafsson G, Flores RL, Boakye-Ansah E, Zelter A, Dickinson MS, Lazar-Stefanita L, Truong DM, Asbury CL, Davis TN, Boeke JD@. DASH/Dam1 complex mutants stabilize ploidy in histone-humanized yeast by weakening kinetochore-microtubule attachments. EMBO Journal, 2023
  • Centromere Evolutionary Genomics

    Despite our recent progress in understanding how yeast centromeres evolved, we still lack a detailed molecular view of how centromeres nucleate kinetochore assembly. I am now studying native centromere–kinetochore structures to reveal, at atomic resolution, how centromere DNA drives this process.

    Other Efforts

    Deep Mutational Scanning

    During my PhD, I worked independently with the Bhabha and Ekiert labs at Johns Hopkins University to develop a pipeline for deep mutational scanning of bacterial phospholipid transporters (e.g., MlaC, LetA). I have continued this work with Priyanka Verma at Washington University.

    Representative publications

  • Santarossa CC, Li Y, Yousef S, Hasdemir HS, Rodriguez CC, Haase MAB, Baek M, Coudray N, Pavek JG, Focke KN, Silverberg AL, Bautista C, Yeh J, Marty M, Baker D, Tajkhorshid E, Ekiert DC@, Bhabha G@. LetA defines a structurally distinct transporter family. Nature, 2026
  • MacRae MR, Puvanendran D, Haase MAB, Coudray N, Kolich L, Lam C, Baek M, Bhabha G@, Ekiert DC@. Protein-protein interactions in the Mla lipid transport system probed by computational structure prediction and deep mutational scanning. JBC, 2023
  • Gallery

    Below are some videos and images taken from my research.

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    Cells of Hanseniaspora uvarum growing in rich medium. These cells grow rapidly, with a doubling time ~60 min. Histone H2A is tagged to track divisions. Haase et al. Genetics, 2024.
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    Histone humanized yeast grow very slowly (doubling time >8 hr) and display fragmented nucleoli throughout the cell cycle. Shown here are cells with NOP10 tagged. Lazar-Stefanita et al. bioRxiv, 2023.
    Synteny analysis
    My first synteny analysis – a mainstay in my research. Haase et al. FEMS Yeast Research, 2017.
    © Max Haase. All rights reserved.